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2017

Beljantseva J, Kudrin P, Andresen L, Shingler V, Atkinson GC, Tenson T, Hauryliuk V
Negative allosteric regulation of Enterococcus faecalis small alarmone synthetase RelQ by single-stranded RNA
Proc Natl Acad Sci U S A. 2017, doi: 10.1073/pnas.1617868114

Beljantseva J, Kudrin P, Jimmy S, Ehn M, Pohl R, Varik V, Tozawa Y, Shingler V, Tenson T, Rejman D, Hauryliuk V
Molecular mutagenesis of ppGpp: turning a RelA activator into an inhibitor
Scientific Reports 2017, 7:41839

Kudrin P, Varik V, Oliveira SR, Beljantseva J, Del Peso Santos T, Dzhygyr I, Rejman D, Cava F, Tenson T, Hauryliuk V
Subinhibitory Concentrations of Bacteriostatic Antibiotics Induce relA-Dependent and relA-Independent Tolerance to β-Lactams
Antimicrobial Agents Chemotherapy 2017, 61(4) doi: 10.1128/AAC.02173-16

2016

Allas UL, Toom L, Selyutina A, Mäeorg U, Medina R, Merits A, Rinken A, Hauryliuk V, Kaldalu N, Tenson T
Antibacterial activity of the nitrovinylfuran G1 (Furvina) and its conversion products
Scientific Reports 2016, 6:36844

Andresen L, Tenson T, Hauryliuk V
Cationic bactericidal peptide 1018 does not specifically target the stringent response alarmone (p)ppGpp
Scientific Reports 2016, 6:36549

Andresen L, Varik V, Tozawa Y, Jimmy S, Lindberg S, Tenson T, Hauryliuk V
Auxotrophy-based High Throughput Screening assay for the identification of Bacillus subtilis stringent response inhibitors
Scientific Reports 2016, 6:35824

Monteferrante CG, Jirgensons A, Varik V, Hauryliuk V, Goessens WH, Hays JP
Evaluation of the characteristics of leucyl-tRNA synthetase (LeuRS) inhibitor AN3365 in combination with different antibiotic classes
Eur J Clin Microbiol Infect Diseases 2016, 35(11):1857-1864

Kaldalu N, Hauryliuk V, Tenson T
Persisters - as elusive as ever
Applied Microbiology and Biotechnology 2016, DOI: 10.1007/s00253-016-7648-8

Arenz S, Abdelshahid M, Sohmen D, Payoe R, Starosta AL, Berninghausen O,  Hauryliuk V, Beckmann R, Wilson DN
The stringent factor RelA adopts an open conformation on the ribosome to stimulate ppGpp synthesis
Nucleic Acids Res. 2016, doi: 10.1093/nar/gkw470

Varik V, Oliveira SRA, Hauryliuk V, Tenson T
Composition of the outgrowth medium modulates wake-up kinetics and ampicillin sensitivity of stringent and relaxed Escherichia coli
Scientific Reports 2016, 6:22308

Kuzmenko A, Derbikova K, Salvatori R, Tankov S, Atkinson GC, Tenson T, Ott M,  Kamenski P, Hauryliuk V
Aim-less translation: loss of Saccharomyces cerevisiae mitochondrial translation initiation factor mIF3/Aim23 leads to unbalanced protein synthesis
Scientific Reports. 2016, 6: 18749

2015

Hauryliuk V, Atkinson GC, Murakami KS, Tenson T, Gerdes K
Recent functional insights into the role of (p)ppGpp in bacterial physiology
Nat Rev Microbiol. 2015 13(5):298-309

Borg A, Holm M, Shiroyama I, Hauryliuk V, Pavlov M, Sanyal S, Ehrenberg M
Fusidic acid targets elongation factor G in several stages of translocation on the bacterial ribosome
Journal of Biological Chemistry 2015, 290(6):3440-54

2014

Atkinson GC, Kuzmenko A, Chicherin I, Soosaar A, Tenson T, Carr M, Kamenski P, Hauryliuk V
An evolutionary ratchet leading to loss of elongation factors in eukaryotes
BMC Evolutionary Biology 2014; 14:35

2013

Kuzmenko A, Atkinson GC, Levitskii S, Zenkin N, Tenson T, Hauryliuk V, Kamenski P 
Mitochondrial translation initiation: conservation and diversification
Biochimie 2013; 100, 132–140

Kuzmenko A, Levitskii SA, Vinogradova E, Atkinson GC, Hauryliuk V, Zenkin N, Kamenski P 
Protein biosynthesis in mitochondria
Biochemistry (Moscow) 2013; 78(8), 855-866

Li W, Atkinson GC, Thakor NS, Allas Ü, Lu CC, Chan KY, Tenson T, Schulten K, Wilson KS, Hauryliuk V, Frank J
Mechanism of tetracycline resistance by ribosomal protection protein Tet(O)
Nature Communications 2013; 4:1477 DOI: 10:1038/ncomms2470

2012

Mitkevich AA, Shyp V, Petrushanko IYu, Soosaar A, Atkinson GC, Tenson T, Makarov AA, Hauryliuk V,
GTPases IF2 and EF-G bind GDP and the SRL RNA in a mutually exclusive manner
Scientific Reports 2012; 2:843 DOI:10.1038/srep00843

Shyp V, Tankov S, Ermakov A, Kudrin P, English BP, Ehrenberg M, Tenson T, Elf J, Hauryliuk V,
Positive allosteric feedback regulation of the stringent response enzyme RelA by its product
EMBO Reports 2012; 13, 835-839
discussed in Research highlights, Nat. Chem. Bio. 2012; 8(9): 738-738

Atkinson GС, Kuzmenko A, Kamenski P, Vysokikh MY, Lakunina V, Tankov S, Smirnova E, Sooraar A, Tenson T, Hauryliuk V
Evolutionary and genetic analyses of mitochondrial translation initiation factors identify the missing mitochondrial IF3 in S. cerevisiae
Nucleic Acids Res. 2012; 40(13), 6122-6134

2011

Kuzmenko A, Tankov S, English B, Tarassov I, Tenson T, Kamenski P, Elf J, Hauryliuk V,
Single molecule tracking fluorescence microscopy in mitochondria reveals highly dynamic but confined movement of Tom40
Scientific Reports 2011; 1:195 DOI:10.1038/srep00195

Atkinson GC, Tenson T, Hauryliuk V,
The RelA/SpoT Homolog (RSH) superfamily: distribution and functional evolution of ppGpp synthetases and hydrolases across the tree of life
PLoS ONE 2011; 6(8): e23479

English B, Hauryliuk V, Sanamard A, Tankov S, Dekker N, Elf, J
Single molecule Investigations of the stringent response machinery in living bacterial cells
Proc Natl Acad Sci U S A 2011; 108(31): E359-364

F1000-ranked article, discussed in PNAS Author Summary, in In vitro and in vivo singe-molecule fluorescence imaging of ribosome-catalyzed protein synthesis, Curr. Opinion in Chem. Biol. 2011; doi:10.1016, in Signalling in space and time: systems dynamics of intracellular communication, EMBO Reports 2011; 12(9): 877-879 and in Research highlights, Biopolymers 2011 Oct; 95(10):iii-iv

Atkinson GC, Hauryliuk V, Tenson T
An ancient family of SelB elongation factor-like proteins with a broad but disjunct distribution across archaea
BMC Evol Biol. 2011; 11:22

2010

Chen L, Muhlard D, Hauryliuk V, Zhihong C, Lim KM, Shyp V, Parker R, Song H
Dom34-Hbs1 complex and implications for its role in No-Go decay
Nat Struct & Mol Biol. 2010 Oct; 17(10):1233-40

Mitkevich VA, Ermakov A, Kulikova AA, Tankov S, Shyp V, Soosar A, Tenson T,  Ehrenberg M, Hauryliuk V
Thermodynamic charachterization of ppGpp binding to EF-G or IF2 and of initiator tRNA binding to free IF2 in the presence of GDP, GTP and ppGpp
J Mol Biol. 2010 Sep; 402:838-846

English B, Sanamrad A, Tankov S, Hauryliuk V, Elf J
Tracking of individual freely diffusing fluorescent protein molecules in the bacterial cytoplasm
arXiv q-bio: 1003.2110, 2010

Kononenko AV, Mitkevich VA, Atkinson GC, Tenson T, Dubovaya VI, Frolova LY, Makarov AA, Hauryliuk V.
GTP-dependent structural rearrangement of the eRF1:eRF3 complex and eRF3 sequence motifs essential for PABP binding.
Nucleic Acids Res. 2010 Feb; 38(2):548-58

discussed in Applications of isothermal titration calorimetry in pure and applied research - survey of literature from 2010, J Mol Recognition. 2012 25(1): 32-52

2009

Hauryliuk V, Mitkevich VA, Draycheva A, Tankov S, Shyp V, Ermakov A, Kulikova AA, Makarov AA, Ehrenberg M.
Thermodynamics of GTP and GDP binding to bacterial initiation factor 2 suggests two types of structural transitions.
J Mol Biol. 2009 Dec 11; 394(4):621-6

Tenson T, Hauryliuk V.
Does the ribosome have initiation and elongation modes of translation?
Mol Microbiol. 2009 Jun; 72(6):1310-5

2008

Atkinson GC, Baldauf SL, Hauryliuk V.
Evolution of nonstop, no-go and nonsense-mediated mRNA decay and their termination factor-derived components.
BMC Evol Biol. 2008 Oct 23; 8:290

Hauryliuk V, Mitkevich VA, Eliseeva NA, Petrushanko IYu, Ehrenberg M, Makarov AA.
The pretranslocation ribosome is targeted by GTP-bound EF-G in partially activated form.
Proc Natl Acad Sci U S A 2008 Oct 14; 105(41):15678-83.

Hauryliuk V, Hansson S, Ehrenberg M.
Cofactor dependent conformational switching of GTPases.
Biophys J. 2008 Aug; 95(4):1704-15.

Andreev D, Hauryliuk V, Terenin I, Dmitriev S, Ehrenberg M, Shatsky I.
The bacterial toxin RelE induces specific mRNA cleavage in the A site of the eukaryote ribosome.
RNA 2008 Feb; 14(2):233-9.

2006

Hauryliuk VV.
GTPases of prokaryotic translational apparatus
Mol Biol (Mosk). 2006 Sep-Oct; 40(5):769-83

Hauryliuk V, Zavialov A, Kisselev L, Ehrenberg M.
Class-1 release factor eRF1 promotes GTP binding by class-2 release factor eRF3.
Biochimie 2006 Jul; 88(7):747-57.

Hauryliuk V, Ehrenberg M.
Two-step selection of mRNAs in initiation of protein synthesis.
Mol. Cell. 2006 Apr 21; 22(2):155-6.

2005

Zavialov AV, Hauryliuk VV, Ehrenberg M.
Guanine-nucleotide exchange on ribosome-bound elongation factor G initiates the translocation of tRNAs.
J Biol. 2005; 4(2):9
discussed in Research News in The GTPase switch in ribosomal translocation, Pete Moore, J Biol. 2005; 4(2):7, and in Research Highlights, Nature 2005 Sep 8; 473, 172-173

Zavialov AV, Hauryliuk VV, Ehrenberg M.
Splitting of the posttermination ribosome into subunits by the concerted action of RRF and EF-G.
Mol. Cell. 2005 Jun 10; 18(6):675-86

Books and book chapters:

Atkinson GC and Hauryliuk V.
Evolution and function of RelA/SpoT Homologue (RSH) proteins.
in Encyclopedia of Life Sciences, John Wiley & Sons, Ltd; February 2012, DOI: 10.1002/9780470015902.a0023959

Hauryliuk V.
Translational GTPases. Structural, biochemical and thermodynamical aspects.
Saarbrücken VDM  Verlag; 2009.


Ehrenberg M, Hauryliuk V, Crist C, Nakamura Y.
Translation termination, prion [PSI+] and ribosomal recycling.
in Translational Control in Biology and Medicine, Edited by Mathews MB, Sonenberg N, Hershey JWB, 7th edn. New York: Cold Spring Harbour Press; 2006: 173-196.

Jokes aside:

Peil O, Hauryliuk V.
A new spin on spinning your samples: balancing rotors in a non-trivial manner
arXiv:1004.3671v1, 2010

Hauryliuk V.
Evolution of translational machinery: could translation termination come into being before elongation?
J Theor Biol. 2007 Oct 7;248(3):574-8

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